As I pulled open the oven door, a warm wave of cinnamon and nutmeg wrapped around me, sparking nostalgia for autumn gatherings. That’s the magic of my Butternut Squash Apple Bake—an inviting dish that marries tender squash with sweet apples and a crunchy granola topping. This recipe is a delightful addition to your table, perfect for a cozy family dinner or as a comforting dessert that leaves even the pickiest eaters asking for seconds. Not only is it simple to prepare in just over an hour, but it's also a lovely way to sneak in some vegetables while delighting everyone with a hint of sweetness. With the blend of flavors and textures, you might just find your new favorite fall treat! Ready to experience this warmth and comfort in a bowl? Let's get cooking!

Why is Butternut Squash Apple Bake special?
Simplicity made spectacular: This recipe requires just a handful of ingredients and minimal effort, making it a go-to for busy weeknights or lazy weekends.
Irresistible aroma fills your kitchen: The mix of cinnamon and nutmeg instantly transforms your space into a cozy haven.
Nutritious and delicious: Packed with fiber and vitamins from both squash and apples, it’s a guilt-free indulgence that everyone can enjoy.
Versatile delight: Serve it warm as a dessert or as a hearty side dish at dinner—either way, it’s sure to impress.
For more delicious twist on apples, try my Baked Apple Chips or the comforting Pasta Bake with Pumpkin Tomato Sauce.
Butternut Squash Apple Bake Ingredients
Use these fresh ingredients for a delicious experience!
For the Bake
• Butternut squash – Peel and dice into even pieces for a uniform cook.
• Medium apples – Choose sweet varieties like Honeycrisp for a perfect balance of flavors.
• Brown sugar – Adds a rich sweetness that beautifully complements the fruity notes.
• Ground cinnamon – This warming spice gives your bake that comforting autumn aroma.
• Ground nutmeg – Just a hint elevates the flavor profile, adding depth.
• Salt – Enhances sweetness and balances flavors beautifully.
• Lemon juice – Brightens the dish and helps prevent the apples from browning.
• Unsalted butter – Melts into the topping, lending a rich, buttery flavor.
For the Topping
• Granola or oats – Provides a delightful crunch that contrasts beautifully with the tender squash and apples.
• Chopped pecans or walnuts (optional) – Adds extra crunch and nutty flavor—perfect for a bit more texture!
Prepare these ingredients and get ready to create a cozy autumn experience with your Butternut Squash Apple Bake!
Step‑by‑Step Instructions for Butternut Squash Apple Bake
Step 1: Preheat the Oven
Begin by preheating your oven to 350°F (175°C). This ensures that your Butternut Squash Apple Bake will cook evenly and develop that lovely golden color. While your oven heats, gather a 9x13 inch baking dish, which you'll use for assembling this delightful dish.
Step 2: Prepare the Fruit
In a large mixing bowl, combine 2 cups of diced butternut squash and 2 medium sliced apples. Take a moment to appreciate the vibrant colors as you mix them together, allowing the sweet apples to complement the earthy squash. This medley not only looks beautiful but creates a wonderful flavor combination.
Step 3: Add Flavor Enhancers
Sprinkle ¼ cup of brown sugar, 1 teaspoon of ground cinnamon, ¼ teaspoon of ground nutmeg, and ¼ teaspoon of salt over your squash and apple mixture. Gently toss everything to coat the fruit and vegetable evenly, letting the warm spices aromatically mix with the sweetness. This step enhances the comforting flavors in your Butternut Squash Apple Bake.
Step 4: Incorporate Lemon Juice
Drizzle 1 tablespoon of lemon juice over the mixture and toss again to ensure every piece is evenly coated. The lemon juice not only adds brightness to the flavors, but it also helps keep the apples from browning. You’ll notice how the mixture begins to glisten, adding to its appeal.
Step 5: Transfer to Baking Dish
Carefully transfer the fruity mixture into your greased 9x13 inch baking dish. Spread it evenly to ensure even cooking across the entire surface. The scent of cinnamon and nutmeg should already begin filling your kitchen, hinting at the deliciousness to come.
Step 6: Prepare the Topping
In a small bowl, mix together ¼ cup of melted unsalted butter with 1 cup of granola or oats. If you're using chopped pecans or walnuts, add them now for extra crunch. Stir until the granola is thoroughly coated with butter, ready to become a golden topping on your Butternut Squash Apple Bake.
Step 7: Assembly
Evenly distribute the buttery granola mixture over the top of the butternut squash and apple layer in your baking dish. The contrasting textures of the crunchy topping against the tender filling will create a delightful eating experience. Make sure to cover the entire surface for that irresistible crispness.
Step 8: Bake Covered
Cover the baking dish with aluminum foil and place it in your preheated oven. Bake for 25 minutes, allowing the butternut squash to soften and the flavors to meld. The foil will help trap steam, making the squash tender as it begins to cook.
Step 9: Bake Uncovered
After 25 minutes, remove the foil and continue baking for another 15-20 minutes or until the butternut squash is tender and the topping is golden brown. Keep an eye on it; the topping will crisp up nicely and invite you with its warm aroma as it turns a gorgeous hue.
Step 10: Cool Before Serving
Once done, carefully remove the Butternut Squash Apple Bake from the oven and let it cool slightly. This brief resting time allows flavors to settle and ensures it's safe to serve. The sweet and spicy aroma should fill your home, making everyone eager to dig in!

Butternut Squash Apple Bake Variations
Get ready to unleash your creativity in the kitchen with these fun twists!
-
Dairy-Free: Substitute unsalted butter with coconut oil for a vegan-friendly option that still delivers rich flavor.
Embrace the nutty aroma of coconut as it mingles with the squash and apples! -
Nut-Free: Omit the pecans or walnuts entirely or swap in sunflower seeds for that satisfying crunch without the nuts.
This leaves you with an equally delicious dish, making it perfect for school lunches! -
Sweetness Swap: Replace brown sugar with maple syrup for a deeper flavor that beautifully complements the squash and apples.
This easy swap adds a touch of caramel-like sweetness that everyone will love. -
Spice it Up: Kick up the flavor by adding a pinch of cayenne or chili powder to the spice blend for a gentle warmth.
It might just become your secret ingredient, elevating this cozy bake into a new realm of deliciousness! -
Fruit Mix: Try adding in cranberries or raisins for a burst of tart sweetness and pleasing chewy texture.
The added fruit not only enhances flavor but also creates a colorful presentation that's as delicious as it looks. -
Texture Twist: Experiment by layering in shredded coconut beneath the granola topping for a tropical crunch.
The toasted coconut adds an extra depth of flavor that will transport you straight to a sunny beach getaway. -
Savory Option: Substitute the sweet spices with thyme and add sautéed onions for a savory side dish that compliments roasted meats beautifully.
This twist transforms your bake into a sophisticated option for dinner gatherings or holiday feasts. -
Apple Variety: Mix Granny Smith and Honeycrisp apples for a delightful balance of sweet and tart flavors.
This blend not only makes the dish more interesting but also adds beautiful color and texture, enhancing the overall experience.
For a delightful side or dessert that focuses on apples, try my comforting Air Fryer Apple Crisp or the decadent Apple Oreo Balls. Enjoy the creative process and make this dish uniquely yours!
Make Ahead Options
These Butternut Squash Apple Bake is perfect for meal prep, allowing you to savor the comforting flavors without the last-minute rush! You can prepare the squash and apple mixture and refrigerate it in an airtight container for up to 24 hours. To maintain quality, add the lemon juice right before you are ready to bake, as it helps prevent browning. If you want to make it even further ahead, you can assemble the entire dish (without baking) and store it in the fridge for up to 3 days. When you're ready to serve, simply bake it according to the instructions, ensuring that every bite is just as delicious as when freshly made!
Tips for the Best Butternut Squash Apple Bake
Ingredient Quality: Use fresh butternut squash and crisp apples for the best flavor and texture. Stale or overly soft ingredients can lead to a mushy bake.
Even Slicing: Dice your squash and slice your apples into uniform pieces to ensure even cooking. This prevents any parts from being under or overcooked.
Taste Testing: Feel free to adjust the amount of brown sugar according to your sweetness preference. Not all apples are equally sweet, so a little taste can guide you!
Resting Time: Allowing the Butternut Squash Apple Bake to cool for a bit before serving enhances the flavors and makes it easier to scoop.
Storage Tips: Store any leftovers in an airtight container in the fridge for up to three days. Reheat gently in the oven to maintain the crispy topping.
Versatile Enjoyment: Experiment with different nuts or even add dried fruits for a twist, allowing your Butternut Squash Apple Bake to evolve with your tastes!
What to Serve with Butternut Squash Apple Bake
Transform your cozy aroma-filled kitchen into a complete dining experience with these delightful pairings.
- Crispy Green Salad: A fresh, zesty salad balances the sweetness of the bake, adding a refreshing crunch to your meal.
- Savory Roasted Vegetables: Offer a medley of seasonal veggies tossed in herbs, bringing warmth and earthy flavors to your table.
- Creamy Mashed Potatoes: The velvety texture of mashed potatoes provides a comforting foundation that complements the bake’s sweet notes beautifully.
- Herb-Infused Quinoa: This nutritious grain dish adds a nutty texture and lightness, making it a great healthy sidekick.
- Garlic Bread: Warm, crusty garlic bread is perfect for scooping up the bake, infusing every bite with rich flavors.
- Apple Cider: Serve a chilled glass of apple cider to enhance the fruitiness of the bake while providing a refreshing sip.
- Vanilla Ice Cream: A scoop of creamy vanilla ice cream brings a delightful contrast to the warm bake, creating an irresistible dessert experience.
- Chai Tea: The spiced flavors of chai tea echo the bake's warmth, wrapping up your meal in cozy comfortfulness.
- Pumpkin Spice Muffins: Add a fun twist with mini muffins, ensuring every bite is filled with autumnal flavors and sweetness.
How to Store and Freeze Butternut Squash Apple Bake
Fridge: Store leftovers in an airtight container for up to 3 days. Be sure to let it cool completely before sealing to prevent moisture buildup.
Freezer: Freeze the cooled Butternut Squash Apple Bake in a tightly sealed container or freezer bag for up to 2 months. Thaw in the fridge overnight before reheating.
Reheating: For best results, reheat in the oven at 350°F (175°C) for about 15-20 minutes. Cover with foil initially to retain moisture, then uncover to crisp up the topping.
Serving Tip: Consider layering the bake with fresh granola right before serving to restore that delightful crunch!

Butternut Squash Apple Bake Recipe FAQs
What type of butternut squash should I use?
Absolutely! When selecting butternut squash, look for ones that are heavy for their size with a tan, smooth skin. Avoid any with dark spots or soft areas, as these can indicate overripeness. A good squash should feel firm and solid, ensuring a delightful texture in your Butternut Squash Apple Bake.
How should I store leftovers?
Very simply! Store any leftovers of your Butternut Squash Apple Bake in an airtight container in the fridge. They’ll keep fresh for up to 3 days. Just make sure it’s completely cooled first to prevent moisture from building up inside the container.
Can I freeze Butternut Squash Apple Bake?
Yes, you can! To freeze your Butternut Squash Apple Bake, first ensure it's completely cooled, then transfer it to a tightly sealed container or a freezer bag. It will last up to 2 months in the freezer. When you're ready to enjoy again, just thaw it in the fridge overnight and reheat in the oven at 350°F (175°C) for about 15-20 minutes, covering with foil initially to keep it moist.
What if my granola topping gets soggy?
Don't fret! If your topping becomes soggy, I recommend taking the extra step of layering some fresh granola right before serving. This keeps it crunchy and adds an extra delightful texture. Also, reheating your bake uncovered can help crisp up the topping again, with an oven temp of about 350°F for 10-15 minutes.
Are there any dietary considerations with this recipe?
Yes! This Butternut Squash Apple Bake is naturally vegetarian and can be made vegan by substituting the unsalted butter with a plant-based alternative and adjusting the granola to ensure it’s dairy-free. Additionally, if you or your guests have nut allergies, feel free to skip the chopped pecans or walnuts in the topping without sacrificing flavor. Just the squash and apples are still a perfect combo!
How ripe should the apples be for the best flavor?
Great question! For the best taste, choose apples that are slightly firm and ripe, but not overly soft. Varieties like Honeycrisp or Granny Smith lend the ideal sweet-tart balance. Apples that are starting to become mealy won't hold up as well during baking—so a crisp apple makes all the difference for your Butternut Squash Apple Bake!

Butternut Squash Apple Bake: A Cozy Autumn Delight
Equipment
- 9x13-inch baking dish
- large mixing bowl
- small bowl
Ingredients
For the Bake
- 4 cups diced butternut squash Peel and dice into even pieces
- 2 medium apples Choose sweet varieties like Honeycrisp
- ¼ cup brown sugar Adds sweetness to the bake
- 1 teaspoon ground cinnamon Provides warming spice
- ¼ teaspoon ground nutmeg Enhances flavor profile
- ¼ teaspoon salt Balances flavors
- 1 tablespoon lemon juice Prevents apples from browning
- ¼ cup unsalted butter Melted into the topping
For the Topping
- 1 cup granola or oats Provides crunchy texture
- ½ cup chopped pecans or walnuts Optional for additional crunch
Instructions
Step-by-Step Instructions
- Preheat your oven to 350°F (175°C). Gather a 9x13 inch baking dish.
- In a large mixing bowl, combine 4 cups of diced butternut squash and 2 medium sliced apples.
- Sprinkle ¼ cup of brown sugar, 1 teaspoon of ground cinnamon, ¼ teaspoon of ground nutmeg, and ¼ teaspoon of salt over the mixture. Toss gently.
- Drizzle 1 tablespoon of lemon juice over the mixture and toss again.
- Transfer the mixture into your greased 9x13 inch baking dish and spread evenly.
- In a small bowl, mix together ¼ cup of melted butter with 1 cup of granola or oats. Add nuts if using.
- Distribute the buttery granola mixture over the squash and apple layer.
- Cover with aluminum foil and bake for 25 minutes.
- After 25 minutes, remove the foil and continue baking for another 15-20 minutes or until golden brown.
- Let the bake cool slightly before serving.





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